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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51769267_51769853_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51769267 - 51769853
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTACCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
GTGTTCTTCATT
Flanking Amino Acid:
LKNKIWVNEFRYGGFSLGAS
Intron Amino Acid Position:
1530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
72.1
0.5
0.9
62.7
38.7
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
60.6
0.41
1.7
75.75
41.6

Associated Gene:

Gene:
ABCA1
Ensembl Gene ID:
ENSAPLG00000014219
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015088
51707899 - 51779784
71886