Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51769960_51770684_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

51769960 - 51770684

Intron Length:

725

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

TTGCTGTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAGTAAC

U12 Branch Point Sequence:

GGGGAAGTAACT

Flanking Amino Acid:

QVKKILELAQGSSGDRFLNS

Intron Amino Acid Position:

1566

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.5

0.98

0.7

81.3

32.8

Major BPS

57.9

0.2

1.1

59.4

34.8

Major PPT

82.1

0.72

0.9

76.5

37.5

Minor 5ss

30.6

-2.2

2.6

36.7

40.4

Minor BPS

-0.6

2.3

55.67

45.7

Associated Gene:

Gene:

ABCA1

Ensembl Gene ID:

ENSAPLG00000014219

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015088

51707899 - 51779784

71886