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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51770760_51771201_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51770760 - 51771201
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
TGGTCTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CCTTTCTGATGT
Flanking Amino Acid:
KGLDTKNNVKVWFNNKGWHA
Intron Amino Acid Position:
1591

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
79.6
0.67
0.9
73.4
37
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
46.5
-0.1
2
63.57
46.9

Associated Gene:

Gene:
ABCA1
Ensembl Gene ID:
ENSAPLG00000014219
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015088
51707899 - 51779784
71886