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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51772724_51773258_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51772724 - 51773258
Intron Length:
535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCACCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACC
Flanking Amino Acid:
YWLANFVWDMCNYIVPATLV
Intron Amino Acid Position:
1707

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
72.2
37.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83
0.74
0.8
73.9
36.4
Minor 5ss
32
-2.1
3.6
44.7
44.3
Minor BPS
69.1
0.58
1.7
81.25
33.5

Associated Gene:

Gene:
ABCA1
Ensembl Gene ID:
ENSAPLG00000014219
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015088
51707899 - 51779784
71886