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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51773375_51773461_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51773375 - 51773461
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
AGATCCTTATCT
Flanking Amino Acid:
PVLALLLLLYGWSITPLMYP
Intron Amino Acid Position:
1745

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73
38.2
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
89.6
0.89
0.6
84.7
22.9
Minor 5ss
30.4
-2.2
3.6
38
46.9
Minor BPS
69.4
0.69
1.6
80.57
40.6

Associated Gene:

Gene:
ABCA1
Ensembl Gene ID:
ENSAPLG00000014219
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015088
51707899 - 51779784
71886