About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51776483_51776893_F

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51776483 - 51776893
Intron Length:
411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAAGAC
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTTGTTTTACA
Flanking Amino Acid:
TGGEAFLKGNSILSNIQEVH
Intron Amino Acid Position:
1975

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
0.9
68
30.5
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
24.6
-2.9
3.2
31.7
42.9
Minor BPS
61.2
0.34
2.1
78.96
37.6

Associated Gene:

Gene:
ABCA1
Ensembl Gene ID:
ENSAPLG00000014219
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015088
51707899 - 51779784
71886