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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51779447_51779643_F

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51779447 - 51779643
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAT
U12 Branch Point Sequence:
TGATGTTACACA
Flanking Amino Acid:
YSVSQTTLDQVFVNFAKDQS
Intron Amino Acid Position:
2215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
69.9
0.49
1
75.2
29.8
Major PPT
93.6
0.98
0.6
89.1
19.8
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
42.6
-0.5
2.3
56.17
43.3

Associated Gene:

Gene:
ABCA1
Ensembl Gene ID:
ENSAPLG00000014219
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015088
51707899 - 51779784
71886