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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51785395_51785496_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51785395 - 51785496
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCGAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TATTTCCTAATT
Flanking Amino Acid:
AHEDARVVAAVRDSVRFLES
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.1
36.5
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
83.9
0.76
0.8
78.2
34.9
Minor 5ss
38.1
-1.3
3.4
52.2
46
Minor BPS
69.4
0.69
1.6
85.62
34.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002729
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002756
51785318 - 51793766
8449