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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51789130_51789192_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
51789130 - 51789192
Intron Length:
63

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCTTGAGAA
5'SS Class:
weak_major
3'SS Sequence:
TCCCTTGCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTCTCTTAGGT
Flanking Amino Acid:
SYGTTEGWFSGPRQNNGIFY
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.1
0.19
1.4
48.7
35.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
77.5
0.62
0.8
71.5
33.1
Minor 5ss
22
-3.2
3.8
26.9
37.9
Minor BPS
59.4
0.37
1.9
80.99
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002729
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002756
51785318 - 51793766
8449