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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51845420_51847790_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
51845420 - 51847790
Intron Length:
2371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTCTTAC
5'SS Class:
weak_major
3'SS Sequence:
TTACATCTCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTCCTTACAT
Flanking Amino Acid:
EAYNQASWKLSNAGLQNAVL
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.5
0.3
1.3
63.1
38
Major BPS
100
1.24
0.5
100
0
Major PPT
71
0.47
0.9
65.4
35.6
Minor 5ss
48.5
-0.1
2.1
61.9
42.9
Minor BPS
69.9
0.7
1.7
86.3
39.3

Associated Gene:

Gene:
PSD3
Ensembl Gene ID:
ENSAPLG00000002837
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002885
51845361 - 51904752
59392