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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51847998_51848100_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51847998 - 51848100
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACGTGCT
5'SS Class:
major
3'SS Sequence:
TCTTTCTTTAAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
CTTTCTTTAAAG
Flanking Amino Acid:
RSDVAKHLGKNNEFSKLVAE
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
72.7
36.9
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
80.7
0.69
1
82
27.2
Minor 5ss
36
-1.6
3.5
50.1
40.5
Minor BPS
71.4
0.53
1.5
72.3
40.7

Associated Gene:

Gene:
PSD3
Ensembl Gene ID:
ENSAPLG00000002837
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030056
51847791 - 51908819
61029
ENSAPLT00000025566
51847791 - 51913688
65898
ENSAPLT00000002885
51845361 - 51904752
59392
ENSAPLT00000038422
51846627 - 51907819
61193