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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5185692_5186762_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5185692 - 5186762
Intron Length:
1071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTAGA
5'SS Class:
strong_major
3'SS Sequence:
CCTTGCTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAA
U12 Branch Point Sequence:
TCCTCTCCAAGG
Flanking Amino Acid:
FSKHTKQSFGEDQLELLTLK
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
78
38.6
Major BPS
55.5
0.14
1.3
66.7
39.7
Major PPT
79.2
0.66
0.8
76.7
32
Minor 5ss
40.6
-1
2.6
51.9
44.6
Minor BPS
42.6
-0.7
2.1
47.5
46

Associated Gene:

Gene:
C18orf54
Ensembl Gene ID:
ENSAPLG00000010526
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010951
5181664 - 5189941
8278