About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5188304_5189209_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5188304 - 5189209
Intron Length:
906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAATCGT
5'SS Class:
major
3'SS Sequence:
TTTTTCCATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TCTTTTTCCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.2
59
45.6
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
83.2
0.75
0.8
82.8
27.9
Minor 5ss
37.3
-1.4
3.2
50.5
45.8
Minor BPS
48.8
-0
1.9
70.72
41.5

Associated Gene:

Gene:
C18orf54
Ensembl Gene ID:
ENSAPLG00000010526
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010951
5181664 - 5189941
8278