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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51893844_51894674_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51893844 - 51894674
Intron Length:
831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
GTTTCTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
TTCTCAGTATGT
Flanking Amino Acid:
ADWRVLLFQAQSQEEMQTWI
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
72.9
36.6
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
84.1
0.77
0.8
76.7
37.4
Minor 5ss
37.5
-1.4
3.3
56.3
41.9
Minor BPS
42.7
-0.4
2.6
68.48
48.1

Associated Gene:

Gene:
PSD3
Ensembl Gene ID:
ENSAPLG00000002837
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002885
51845361 - 51904752
59392
ENSAPLT00000046956
51867294 - 51904752
37459
ENSAPLT00000038422
51846627 - 51907819
61193
ENSAPLT00000030056
51847791 - 51908819
61029
ENSAPLT00000025566
51847791 - 51913688
65898