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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51894820_51897976_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51894820 - 51897976
Intron Length:
3157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
CGTGTTTCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTCTGTAATT
Flanking Amino Acid:
LPATTTKLSQDEQLKSHEAK
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
74.8
38.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
67.6
0.4
1.1
67.6
38.1
Minor 5ss
40.1
-1.1
3.1
55.9
48.3
Minor BPS
65.7
0.57
2
84.68
36.4

Associated Gene:

Gene:
PSD3
Ensembl Gene ID:
ENSAPLG00000002837
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025566
51847791 - 51913688
65898
ENSAPLT00000002885
51845361 - 51904752
59392
ENSAPLT00000046956
51867294 - 51904752
37459
ENSAPLT00000038422
51846627 - 51907819
61193
ENSAPLT00000030056
51847791 - 51908819
61029