About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51898121_51904539_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51898121 - 51904539
Intron Length:
6419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCACTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCTTTTTCACT
Flanking Amino Acid:
KLKDHYLEFEKSRYEIYVGL
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
81.2
0.7
0.8
73.2
36.9
Minor 5ss
45.4
-0.5
2.5
59.2
45.4
Minor BPS
65.3
0.56
1.7
82.56
39.6

Associated Gene:

Gene:
PSD3
Ensembl Gene ID:
ENSAPLG00000002837
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038422
51846627 - 51907819
61193
ENSAPLT00000030056
51847791 - 51908819
61029
ENSAPLT00000025566
51847791 - 51913688
65898
ENSAPLT00000002885
51845361 - 51904752
59392
ENSAPLT00000046956
51867294 - 51904752
37459