About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5190257_5192728_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5190257 - 5192728
Intron Length:
2472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTACAAAATGTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTGTTTTTACAA
Flanking Amino Acid:
SKPSKEYAGNIYRGEGIIEE
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
59.8
0.22
1
53.3
40.3
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
55.4
0.17
1.7
67.43
39.5

Associated Gene:

Gene:
STARD6
Ensembl Gene ID:
ENSAPLG00000021618
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024553
5189819 - 5198350
8532