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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5190981_5196174_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5190981 - 5196174
Intron Length:
5194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
CTCCCTGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAG
U12 Branch Point Sequence:
CTTCTCTTCAGT
Flanking Amino Acid:
LRIQKTTDNLMICLSHQLSA
Intron Amino Acid Position:
771

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
76.9
33.7
Major BPS
63.4
0.33
1.6
73.6
41.8
Major PPT
78.6
0.64
0.8
75.7
32.8
Minor 5ss
35.1
-1.7
2.8
38.8
40.3
Minor BPS
49.9
0.07
2.1
72.32
44.9

Associated Gene:

Gene:
POLI
Ensembl Gene ID:
ENSAPLG00000010510
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046609
5190892 - 5205418
14527