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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5192856_5193614_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5192856 - 5193614
Intron Length:
759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
TACTCACTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATGTACTCACTT
Flanking Amino Acid:
SYSLLESIDQDTGIYHSVTH
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.7
39
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
73
0.52
0.8
66.8
34
Minor 5ss
30.1
-2.3
3.2
38.5
46.5
Minor BPS
47.7
-0
2
67.54
43.4

Associated Gene:

Gene:
STARD6
Ensembl Gene ID:
ENSAPLG00000021618
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024553
5189819 - 5198350
8532