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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51956913_51957052_F

Intron Information:

Intron Rank:
2
Intron Class:
major_hybrid
Intron Phase:
0
Intron Coordinates:
51956913 - 51957052
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
CACAATGAAACAG|G
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAA
Flanking Amino Acid:
KTFVVIHGWTVTGMYESWVP
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
69.1
38.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
50
-0
1.1
43
40.7
Minor 5ss
37.8
-1.4
3.1
48.2
47.4
Minor BPS
76.9
0.84
1.2
83.98
29.3

Associated Gene:

Gene:
LPL
Ensembl Gene ID:
ENSAPLG00000003392
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003487
51949814 - 51965307
15494