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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51957233_51957689_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51957233 - 51957689
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CAGATTTTAAAT
Flanking Amino Acid:
DVAMFIDWMEEKVNYPLNNV
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.6
1.05
0.7
81.4
32.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.2
0.84
0.7
79.8
32.2
Minor 5ss
34.5
-1.8
2.9
43.8
43.9
Minor BPS
52
0.14
1.5
62.32
41.8

Associated Gene:

Gene:
LPL
Ensembl Gene ID:
ENSAPLG00000003392
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003487
51949814 - 51965307
15494