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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51959511_51959697_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51959511 - 51959697
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTGAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTCTTTGAAG
Flanking Amino Acid:
LRLIAEKGLADVDQLVKCSH
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
78.6
37.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.7
0.78
0.9
87.1
23.9
Minor 5ss
30.4
-2.2
3.2
38.7
46.6
Minor BPS
70.8
0.51
1.4
75.57
36.2

Associated Gene:

Gene:
LPL
Ensembl Gene ID:
ENSAPLG00000003392
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003487
51949814 - 51965307
15494