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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5196291_5196772_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5196291 - 5196772
Intron Length:
482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTTAA
5'SS Class:
major
3'SS Sequence:
GGAAAATCTACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
TTATCTAGAAGT
Flanking Amino Acid:
LSSSQSNSLLRSNGKCYFQR
Intron Amino Acid Position:
732

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.8
30.7
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
57.7
0.17
1.1
47.2
44.6
Minor 5ss
45.7
-0.5
2.5
58.1
46.4
Minor BPS
49.6
0.05
2
74.76
41.7

Associated Gene:

Gene:
POLI
Ensembl Gene ID:
ENSAPLG00000010510
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046609
5190892 - 5205418
14527