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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5196320_5196772_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5196320 - 5196772
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTTAA
5'SS Class:
major
3'SS Sequence:
CCTGCCATTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGCCAT
U12 Branch Point Sequence:
CTTGTCCTAGCT
Flanking Amino Acid:
LSSSQSNSLLSLSRSTGKST
Intron Amino Acid Position:
653

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.8
30.7
Major BPS
49.9
-0
1.4
61.8
44.5
Major PPT
62.7
0.29
1.1
64.4
35.5
Minor 5ss
45.7
-0.5
2.5
58.1
46.4
Minor BPS
48.8
-0
2
71.85
45.2

Associated Gene:

Gene:
POLI
Ensembl Gene ID:
ENSAPLG00000010510
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027923
5196175 - 5205418
9244