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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51963522_51964553_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51963522 - 51964553
Intron Length:
1032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTGTCTGTATTT
Flanking Amino Acid:
LEQPVNRKRGGAKKASKENS
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
68.7
36.4
Major BPS
77.5
0.68
1
79.6
33
Major PPT
85.2
0.79
0.7
80.5
25
Minor 5ss
30.3
-2.3
3.2
31.5
42.2
Minor BPS
49.8
0.07
2.2
74.92
43

Associated Gene:

Gene:
LPL
Ensembl Gene ID:
ENSAPLG00000003392
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003487
51949814 - 51965307
15494