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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5196444_5196772_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5196444 - 5196772
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTTAA
5'SS Class:
major
3'SS Sequence:
TCTAACAACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTTTCTAACA
Flanking Amino Acid:
LSSSQSNSLLRRRPSGEDES
Intron Amino Acid Position:
732

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.8
30.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
63.4
0.3
1
59.6
40.3
Minor 5ss
45.7
-0.5
2.5
58.1
46.4
Minor BPS
70.7
0.64
1.6
83.44
30.4

Associated Gene:

Gene:
POLI
Ensembl Gene ID:
ENSAPLG00000010510
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010948
5196311 - 5205418
9108