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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5203474_5204156_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5203474 - 5204156
Intron Length:
683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAACCCTTATTT
Flanking Amino Acid:
RNPELRDKPLGVQQKSLVVT
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
78.9
35.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.6
0.64
0.8
76.7
30.8
Minor 5ss
35
-1.7
3.8
55.2
49
Minor BPS
58.6
0.35
1.6
70.44
40.1

Associated Gene:

Gene:
POLI
Ensembl Gene ID:
ENSAPLG00000010510
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010948
5196311 - 5205418
9108
ENSAPLT00000046609
5190892 - 5205418
14527
ENSAPLT00000027923
5196175 - 5205418
9244