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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5210976_5216625_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5210976 - 5216625
Intron Length:
5650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAGGTTTA
5'SS Class:
major
3'SS Sequence:
TTCTTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
ACATACTAAAGT
Flanking Amino Acid:
MLNYACYVPSGKKFRSK
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.2
68
39.9
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
89
0.88
0.6
88.7
20.7
Minor 5ss
44.4
-0.6
3.1
57.9
46.7
Minor BPS
47
-0.1
2.1
63.94
46

Associated Gene:

Gene:
MBD2
Ensembl Gene ID:
ENSAPLG00000010058
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010472
5210419 - 5234922
24504