About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52110385_52277094_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52110385 - 52277094
Intron Length:
166710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCCAG
5'SS Class:
major
3'SS Sequence:
CCTTTACTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAC
U12 Branch Point Sequence:
CTCCCCTTTACT
Flanking Amino Acid:
FLHSRRCVPVGRATSEGPIQ
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
61.5
44.7
Major BPS
61.7
0.29
1.1
55
40.4
Major PPT
74.4
0.55
1
73.5
36
Minor 5ss
37.4
-1.4
3.1
44.4
44.4
Minor BPS
64.8
0.55
1.7
77.71
44.4

Associated Gene:

Gene:
NRG1
Ensembl Gene ID:
ENSAPLG00000014022
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035634
52110345 - 52567677
457333