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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52114630_52277094_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52114630 - 52277094
Intron Length:
162465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTACTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAC
U12 Branch Point Sequence:
CTCCCCTTTACT
Flanking Amino Acid:
SAGSDLHASLGRATSEGPIQ
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.1
34.7
Major BPS
61.7
0.29
1.1
55
40.4
Major PPT
74.4
0.55
1
73.5
36
Minor 5ss
27.1
-2.6
2.9
24.2
36.8
Minor BPS
64.8
0.55
1.7
77.71
44.4

Associated Gene:

Gene:
NRG1
Ensembl Gene ID:
ENSAPLG00000014022
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044149
52114581 - 52571476
456896