Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52143199_52146046_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

52143199 - 52146046

Intron Length:

2848

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTA|GTATTACAC

5'SS Class:

weak_major

3'SS Sequence:

TGAGGGTGGACAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

AGAATAGTAATT

Flanking Amino Acid:

TWSTYLFTLLETGNQTSKIG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

53.2

0.08

1.1

35.1

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

49.3

-0

1.2

41.6

47.2

Minor 5ss

40.3

-1.1

3.1

52.5

39.6

Minor BPS

42.6

-0.4

2.1

57.7

38.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026331

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036324

52143148 - 52149656

6509