Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52146283_52149637_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52146283 - 52149637

Intron Length:

3355

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CTA|GCAGGTGGG

5'SS Class:

major

3'SS Sequence:

TGTGGCATGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGACAC

U12 Branch Point Sequence:

CAGGAGTTGACA

Flanking Amino Acid:

MWQRLAKVLMPLPQEL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.36

1.2

61.1

40.5

Major BPS

57.7

0.19

1.2

66.7

Major PPT

61.2

0.25

1.1

55.2

44.6

Minor 5ss

22.2

-3.2

4.1

31.7

37.9

Minor BPS

41.6

-0.6

2.2

47.48

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026331

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036324

52143148 - 52149656

6509