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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5216786_5222606_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5216786 - 5222606
Intron Length:
5821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
LRNDSLNQNKGKPDLNTTLP
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
68.7
38.4
Major BPS
84.4
0.85
1
84
34.5
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
42
-0.9
2.5
49.5
46.8
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
MBD2
Ensembl Gene ID:
ENSAPLG00000010058
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010472
5210419 - 5234922
24504