About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5229144_5229714_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5229144 - 5229714
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTGC
5'SS Class:
major
3'SS Sequence:
ATCTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATCTTTATTT
Flanking Amino Acid:
KSMELPKGLQGVGPGNNDDT
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
57.8
42.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80
0.68
0.8
78.5
34
Minor 5ss
36.1
-1.6
3.4
50.8
45.8
Minor BPS
70.4
0.72
1.5
84.48
36.6

Associated Gene:

Gene:
MBD2
Ensembl Gene ID:
ENSAPLG00000010058
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010472
5210419 - 5234922
24504