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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5229893_5233068_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5229893 - 5233068
Intron Length:
3176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
TCTCCCTTTCTC
Flanking Amino Acid:
KAFIVTDDDIRKQEERVQQV
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
67.6
0.44
1.2
75
40
Major PPT
87.1
0.84
0.7
84.7
23
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
41.7
-0.6
3.5
63.76
42.2

Associated Gene:

Gene:
MBD2
Ensembl Gene ID:
ENSAPLG00000010058
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010472
5210419 - 5234922
24504