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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52322235_52421031_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52322235 - 52421031
Intron Length:
98797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATTCTTTTATTT
Flanking Amino Acid:
SLQKTMHTSTAVPPKLKEMK
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.3
0.82
0.7
85.7
28.8
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
58.4
0.34
1.5
74.96
36.3

Associated Gene:

Gene:
NRG1
Ensembl Gene ID:
ENSAPLG00000014022
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014626
52322186 - 52567677
245492