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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52407484_52421031_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52407484 - 52421031
Intron Length:
13548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
TTTATTTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATTCTTTTATTT
Flanking Amino Acid:
QEITSSASFFTVPPKLKEMK
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.2
42.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.3
0.82
0.7
85.7
28.8
Minor 5ss
39.7
-1.2
3
52
39.8
Minor BPS
58.4
0.34
1.5
74.96
36.3

Associated Gene:

Gene:
NRG1
Ensembl Gene ID:
ENSAPLG00000014022
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033250
52407405 - 52571476
164072