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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52427579_52434992_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52427579 - 52434992
Intron Length:
7414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTATGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
CACATTATAACT
Flanking Amino Acid:
KASVIITDTNESTSKIPVST
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.2
40.6
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
85
0.79
0.9
77.1
41.8
Minor 5ss
36.8
-1.5
3.5
53.4
44.8
Minor BPS
48.5
-0
1.6
61.91
42.2

Associated Gene:

Gene:
NRG1
Ensembl Gene ID:
ENSAPLG00000014022
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023765
52388624 - 52567677
179054
ENSAPLT00000042591
52388576 - 52567677
179102
ENSAPLT00000014626
52322186 - 52567677
245492
ENSAPLT00000035634
52110345 - 52567677
457333
ENSAPLT00000044149
52114581 - 52571476
456896
ENSAPLT00000033250
52407405 - 52571476
164072
ENSAPLT00000044107
52388576 - 52567677
179102
ENSAPLT00000030012
52388624 - 52667369
278746
ENSAPLT00000044032
52388624 - 52571476
182853