About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52427579_52538106_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52427579 - 52538106
Intron Length:
110528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTATTTTCATT
Flanking Amino Acid:
KASVIITDTNATSTSTTGTS
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.2
40.6
Major BPS
100
1.24
0.5
100
0
Major PPT
85.3
0.8
0.7
84.1
30.8
Minor 5ss
36.8
-1.5
3.5
53.4
44.8
Minor BPS
52.5
0.16
1.7
72.43
39.2

Associated Gene:

Gene:
NRG1
Ensembl Gene ID:
ENSAPLG00000014022
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032425
52388624 - 52567677
179054