Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52435044_52437853_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52435044 - 52437853

Intron Length:

2810

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTAAGTTCA

5'SS Class:

major

3'SS Sequence:

CTGTGTGTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTTAT

U12 Branch Point Sequence:

TTATTCTTACAA

Flanking Amino Acid:

VSTEGTKTSSQPMLRIRAST

Intron Amino Acid Position:

135

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.7

1.3

77.7

33.5

Major BPS

78.7

0.71

1.2

71.7

44.6

Major PPT

75.1

0.56

68.6

Minor 5ss

41.9

-0.9

2.7

49.9

39.7

Minor BPS

61.6

0.36

1.7

73.09

38.5

Associated Gene:

Gene:

NRG1

Ensembl Gene ID:

ENSAPLG00000014022

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035634

52110345 - 52567677

457333

ENSAPLT00000044149

52114581 - 52571476

456896

ENSAPLT00000033250

52407405 - 52571476

164072

ENSAPLT00000044107

52388576 - 52567677

179102

ENSAPLT00000030012

52388624 - 52667369

278746

ENSAPLT00000044032

52388624 - 52571476

182853

ENSAPLT00000014626

52322186 - 52567677

245492

ENSAPLT00000042591

52388576 - 52567677

179102