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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52435044_52538106_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52435044 - 52538106
Intron Length:
103063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TGTCTTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTATTTTCATT
Flanking Amino Acid:
VSTEGTKTSSPTSTSTTGTS
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.3
77.7
33.5
Major BPS
100
1.24
0.5
100
0
Major PPT
85.3
0.8
0.7
84.1
30.8
Minor 5ss
41.9
-0.9
2.7
49.9
39.7
Minor BPS
52.5
0.16
1.7
72.43
39.2

Associated Gene:

Gene:
NRG1
Ensembl Gene ID:
ENSAPLG00000014022
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023765
52388624 - 52567677
179054