About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52437905_52538106_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52437905 - 52538106
Intron Length:
100202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TGTCTTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTATTTTCATT
Flanking Amino Acid:
ASTEGTNTSSSTSTSTTGTS
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
80.4
34
Major BPS
100
1.24
0.5
100
0
Major PPT
85.3
0.8
0.7
84.1
30.8
Minor 5ss
42.2
-0.9
2.9
61.3
43
Minor BPS
52.5
0.16
1.7
72.43
39.2

Associated Gene:

Gene:
NRG1
Ensembl Gene ID:
ENSAPLG00000014022
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030012
52388624 - 52667369
278746
ENSAPLT00000044032
52388624 - 52571476
182853
ENSAPLT00000014626
52322186 - 52567677
245492
ENSAPLT00000042591
52388576 - 52567677
179102
ENSAPLT00000035634
52110345 - 52567677
457333
ENSAPLT00000044149
52114581 - 52571476
456896
ENSAPLT00000033250
52407405 - 52571476
164072
ENSAPLT00000044107
52388576 - 52567677
179102