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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52556703_52560004_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52556703 - 52560004
Intron Length:
3302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAACATT
5'SS Class:
major
3'SS Sequence:
GTTTCATATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TGTCTATTAAAG
Flanking Amino Acid:
IMCVVAYCKTKKQRKKLHDR
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1
77.9
36.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
76.4
0.59
1
70
39.7
Minor 5ss
46.4
-0.4
3
66.4
38.9
Minor BPS
51.2
-0.1
1.8
60.28
40.7

Associated Gene:

Gene:
NRG1
Ensembl Gene ID:
ENSAPLG00000014022
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023765
52388624 - 52567677
179054
ENSAPLT00000035634
52110345 - 52567677
457333
ENSAPLT00000044149
52114581 - 52571476
456896
ENSAPLT00000014626
52322186 - 52567677
245492
ENSAPLT00000033250
52407405 - 52571476
164072
ENSAPLT00000044107
52388576 - 52567677
179102
ENSAPLT00000032425
52388624 - 52567677
179054
ENSAPLT00000044032
52388624 - 52571476
182853
ENSAPLT00000030012
52388624 - 52667369
278746
ENSAPLT00000042591
52388576 - 52567677
179102