Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52561801 - 52562316

Intron Length:

516

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTCAAC

5'SS Class:

major

3'SS Sequence:

TTCTTCCCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTGAC

U12 Branch Point Sequence:

ACCCTCTGACCC

Flanking Amino Acid:

SITVTQTPSHSWSNGHTESI

Intron Amino Acid Position:

343

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.6

0.49

1.1

65.3

40.7

Major BPS

69.1

0.47

60.7

37.6

Major PPT

86.5

0.82

0.7

81.4

23.6

Minor 5ss

38.7

-1.3

3.1

51.8

Minor BPS

45.6

-0.3

1.7

50.27

40.4

Associated Gene:

Gene:

NRG1

Ensembl Gene ID:

ENSAPLG00000014022

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032425

52388624 - 52567677

179054

ENSAPLT00000044032

52388624 - 52571476

182853

ENSAPLT00000030012

52388624 - 52667369

278746

ENSAPLT00000042591

52388576 - 52567677

179102

ENSAPLT00000023765

52388624 - 52567677

179054

ENSAPLT00000035634

52110345 - 52567677

457333

ENSAPLT00000044149

52114581 - 52571476

456896

ENSAPLT00000014626

52322186 - 52567677

245492

ENSAPLT00000033250

52407405 - 52571476

164072

ENSAPLT00000044107