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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52658598_52667358_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52658598 - 52667358
Intron Length:
8761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TGCATCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGCAT
U12 Branch Point Sequence:
TGCATCTCCACA
Flanking Amino Acid:
KNVTVCTSCKGRA*
Intron Amino Acid Position:
663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
77.1
37.8
Major BPS
59.8
0.25
1.5
71.4
45.1
Major PPT
71.5
0.48
0.9
64.7
36.4
Minor 5ss
42.9
-0.8
2.8
59.8
44.7
Minor BPS
45.7
-0.3
2
56.56
42.6

Associated Gene:

Gene:
NRG1
Ensembl Gene ID:
ENSAPLG00000014022
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030012
52388624 - 52667369
278746