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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52676734_52677349_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52676734 - 52677349
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTTGT
5'SS Class:
major
3'SS Sequence:
GTTCTCTGTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTCTCACAGC
Flanking Amino Acid:
PVVQIIYSEKFRDVYDYFRA
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
67.8
39.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
73.1
0.52
0.9
65.9
40.9
Minor 5ss
38.5
-1.3
3
50
46.3
Minor BPS
42
-0.6
2.4
62.23
43.8

Associated Gene:

Gene:
FNTA
Ensembl Gene ID:
ENSAPLG00000013651
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014242
52676230 - 52686816
10587