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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52681747_52683863_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52681747 - 52683863
Intron Length:
2117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTTAGTAAT
5'SS Class:
major
3'SS Sequence:
CTTTTTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
CATTCATGAACT
Flanking Amino Acid:
DDPPILDREVQYTLEMITAV
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.2
73.2
37.4
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
88
0.86
0.6
83.5
24.8
Minor 5ss
36
-1.6
2.7
50
39.9
Minor BPS
62.9
0.48
1.8
79.77
41.5

Associated Gene:

Gene:
FNTA
Ensembl Gene ID:
ENSAPLG00000013651
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014242
52676230 - 52686816
10587