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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52747753_52750603_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52747753 - 52750603
Intron Length:
2851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCATCGTAATT
Flanking Amino Acid:
SNREAMDPIAELLSQLSGVR
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
74.3
34.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.5
0.66
0.9
76.8
31.8
Minor 5ss
33.2
-1.9
3.4
45.7
43.4
Minor BPS
54.8
0.23
2
75.63
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027850
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029304
52746940 - 52753021
6082