Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52750887_52752377_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52750887 - 52752377

Intron Length:

1491

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTTGT

5'SS Class:

strong_major

3'SS Sequence:

TGCTGCTGTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACCGAC

U12 Branch Point Sequence:

TGCTGCTGTACA

Flanking Amino Acid:

TIQNSQFLLTRLNDPKMSEA

Intron Amino Acid Position:

142

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

1.1

78.8

38.3

Major BPS

45.5

-0.2

1.1

39.5

31.1

Major PPT

70.9

0.47

64.3

41.6

Minor 5ss

47.5

-0.2

2.6

67.8

Minor BPS

46.5

-0.2

2.2

60.85

44.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027850

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029304

52746940 - 52753021

6082