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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52759635_52768163_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52759635 - 52768163
Intron Length:
8529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGAAG
5'SS Class:
major
3'SS Sequence:
CTTTTATTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGCTTTTTAACT
Flanking Amino Acid:
YPGHVQPATASDVVA*
Intron Amino Acid Position:
656

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
62.9
43.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
89.7
0.89
0.7
84.8
28.7
Minor 5ss
29.6
-2.3
3.4
38.2
47
Minor BPS
76.2
0.9
1.1
83.79
37.4

Associated Gene:

Gene:
HOOK3
Ensembl Gene ID:
ENSAPLG00000013045
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013658
52759619 - 52813948
54330